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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
total RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
ATAC-seq
Assay category
21
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
control
Date released
13
November, 2017
12
February, 2020
6
October, 2017
5
July, 2019
3
October, 2019
2
March, 2020
February, 2023
Available data
216
bigWig
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
41
Homo sapiens
Biosample type
37
tissue
4
primary cell
Organ
210
kidney
190
pancreas
152
epithelium
146
heart
103
liver
85
bone element
70
connective tissue
43
adipose tissue
41
brain
36
musculature of body
23
eye
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
February, 2023
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
ATAC-seq
tissue
brain
6
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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