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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
4
pCHi-C
2
ChIP-seq
1
ATAC-seq
1
GRO-seq
1
RRBS
Assay category
15
Transcription
2
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
February, 2023
21
October, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
bam
35
bigWig
27
fastq
20
bed narrowPeak
15
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
24
Homo sapiens
Biosample type
22
tissue
1
in vitro differentiated cells
1
primary cell
Organ
210
kidney
201
pancreas
155
epithelium
146
heart
110
liver
85
bone element
77
connective tissue
48
adipose tissue
42
brain
39
musculature of body
23
eye
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
2
intestine
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
1
hg18
1
hg19
Lab
24
AMP-T2D consortium
files.file_type!
bam
month_released!
February, 2023
organ_slims!
thymus
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
pCHi-C
ChIP-seq
ATAC-seq
GRO-seq
RRBS
tissue
islet of Langerhans
14
4
2
1
retina
1
in vitro differentiated cells
pancreatic endoderm
1
primary cell
retinal pigment epithelial cell
1
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