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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
4
Hi-C
4
total RNA-seq
2
pCHi-C
2
single cell RNA-seq
1
ChIP-seq
Assay category
35
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
35
February, 2023
4
February, 2020
4
July, 2019
2
August, 2021
1
March, 2020
1
May, 2021
1
October, 2019
Available data
bam
155
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
65
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
48
Homo sapiens
Biosample type
48
tissue
Organ
253
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
1
T1D
Genome assembly (visualization)
35
GRCh38
Lab
47
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
bam
month_released!
July, 2018
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
Hi-C
total RNA-seq
pCHi-C
single cell RNA-seq
ChIP-seq
tissue
coronary artery
35
1
gastrocnemius medialis
4
1
pulmonary artery
2
thymus
2
islet of Langerhans
1
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