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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
9
Hi-C
6
single cell RNA-seq
4
total RNA-seq
1
ChIP-seq
1
pCHi-C
Assay category
35
DNA accessibility
10
Transcription
9
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
35
February, 2023
6
August, 2021
6
July, 2019
4
February, 2020
3
March, 2020
2
October, 2019
Available data
bam
189
bigWig
173
bed narrowPeak
117
bigBed narrowPeak
69
tsv
45
bed broadPeak
45
bigBed broadPeak
43
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
56
Homo sapiens
Biosample type
52
tissue
4
primary cell
Organ
253
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
56
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
month_released!
July, 2018
organ_slims!
nerve
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
Hi-C
single cell RNA-seq
total RNA-seq
ChIP-seq
pCHi-C
tissue
coronary artery
35
1
aorta
1
4
1
gastrocnemius medialis
4
1
pulmonary artery
2
ascending aorta
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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