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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
4
ATAC-seq
4
Hi-C
1
ChIP-seq
Assay category
6
Transcription
4
3D chromatin structure
4
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
8
February, 2023
4
July, 2019
2
February, 2020
1
October, 2019
Available data
bam
67
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
4
bed bed3
4
txt
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
15
tissue
Organ
253
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
15
AMP
Genome assembly (visualization)
4
hg19
Lab
15
AMP-T2D consortium
files.file_type!
bam
month_released!
July, 2018
organ_slims!
nerve
BIOSAMPLE
ASSAY
15 results
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total RNA-seq
ATAC-seq
Hi-C
ChIP-seq
tissue
gastrocnemius medialis
1
4
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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