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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
3
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
July, 2019
1
October, 2019
Available data
bam
132
bigWig
119
bed narrowPeak
75
bigBed narrowPeak
63
tsv
12
bed broadPeak
12
bigBed broadPeak
9
bed bed3+
3
hic
2
bedpe bed3+
2
fastq
2
tagAlign
1
tar
Organism
48
Homo sapiens
Biosample type
46
tissue
2
primary cell
Organ
pancreas
206
kidney
199
epithelium
173
heart
95
liver
93
bone element
89
connective tissue
53
eye
49
adipose tissue
48
blood vessel
48
vasculature
39
artery
38
brain
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
35
GRCh38
3
hg19
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
month_released!
July, 2019
organ_slims!
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
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