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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
single cell RNA-seq
67
ATAC-seq
59
total RNA-seq
26
ChIP-seq
16
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
175
Transcription
83
DNA accessibility
26
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
10
histone
10
histone modification
7
broad histone mark
5
control
3
narrow histone mark
1
RNA binding protein
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
191
bed narrowPeak
bam
141
bigWig
123
tsv
105
fastq
79
bigBed narrowPeak
64
xls
57
txt
38
tagAlign
14
bed bed3+
13
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
296
Homo sapiens
Biosample type
256
tissue
36
cell line
5
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
31
liver
19
lung
7
brain
6
blood vessel
6
vasculature
5
connective tissue
5
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
279
AMP
19
LungMap
Genome assembly (visualization)
65
GRCh38
21
hg19
Lab
128
Katalin Susztak, Upenn
110
AMP-T2D consortium
36
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
298 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 13 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
primary cell
pancreatic cell
1
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