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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
21
ATAC-seq
16
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
9
total RNA-seq
1
DNAme array
Assay category
74
DNA binding
31
DNA accessibility
18
Transcription
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
121
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
0
February, 2018
Available data
334
bigWig
bam
188
tsv
149
bed narrowPeak
90
tagAlign
39
fastq
2
bed bed3+
Organism
139
Homo sapiens
Biosample type
56
primary cell
47
in vitro differentiated cells
21
tissue
16
cell line
Organ
19
lung
17
pancreas
16
epithelium
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
105
AMP
19
LungMap
16
T1D
Genome assembly (visualization)
40
hg19
Lab
99
Kyle Gaulton, UCSD
22
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
17
inconsistent ontology term
files.file_type!
bam
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
140 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
single cell RNA-seq
total RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
lung
10
9
pancreas
1
thymus
1
cell line
EndoC_BH1
16
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