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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
10
MeRIP-seq
7
WGBS
6
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
115
DNA binding
13
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
96
histone
96
histone modification
60
broad histone mark
36
narrow histone mark
24
control
5
nucleotide modification
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
360
fastq
349
bigWig
190
bed narrowPeak
119
tsv
85
tagAlign
57
bigBed narrowPeak
42
bed broadPeak
34
bed bed3+
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
csv
Organism
140
Homo sapiens
Biosample type
118
tissue
14
in vitro differentiated cells
6
cell line
2
primary cell
Organ
54
connective tissue
40
adipose tissue
30
pancreas
28
liver
26
musculature of body
6
epithelium
Project
140
AMP
Genome assembly (visualization)
24
hg19
Lab
130
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
files.file_type!
bam
month_released!
April, 2020
BIOSAMPLE
ASSAY
140 results
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Clear Filters
ChIP-seq
MeRIP-seq
WGBS
RRBS
DNase-seq
single cell RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
liver
23
3
1
skeletal muscle tissue
22
4
islet of Langerhans
20
4
adipose tissue
1
+ See 1 more…
in vitro differentiated cells
adipocyte
14
cell line
EndoC_BH1
6
primary cell
pancreatic cell
1
skeletal muscle myoblast
1
See all biosamples
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