Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 115ChIP-seq
  • 7WGBS
  • 6RRBS
  • 1DNase-seq
Assay category
  • 115DNA binding
  • 13DNA methylation
  • 1DNA accessibility
Target of assay
  • 96histone
  • 96histone modification
  • 60broad histone mark
  • 36narrow histone mark
  • 19control
Date released
  • 270August, 2021
  • 205February, 2023
  • 176May, 2022
  • 143February, 2021
  • 129August, 2017
  • 122May, 2021
  • 64October, 2019
  • 59September, 2020
  • 58May, 2020
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • 287fastq
  • bam
  • 272bigWig
  • 142bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 33bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 129Homo sapiens
Biosample type
  • 114tissue
  • 14in vitro differentiated cells
  • 1primary cell
Organ
  • 54connective tissue
  • 40adipose tissue
  • 28liver
  • 26musculature of body
  • 20pancreas
Project
  • 129AMP
Genome assembly (visualization)
  • 24hg19
Lab
  • 129AMP-T2D consortium
files.file_type!
  • bam
BIOSAMPLE
ASSAY

129 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
tissue
subcutaneous abdominal adipose tissue363
liver2331
skeletal muscle tissue224
islet of Langerhans20
adipose tissue1
in vitro differentiated cells
adipocyte14
primary cell
skeletal muscle myoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego