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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 66ATAC-seq
  • 59total RNA-seq
  • 19ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 165Transcription
  • 72DNA accessibility
  • 19DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 4histone
  • 4histone modification
  • 2broad histone mark
  • 2narrow histone mark
  • 1RNA binding protein
Date released
  • 270August, 2021
  • 205February, 2023
  • 176May, 2022
  • 143February, 2021
  • 129August, 2017
  • 122May, 2021
  • 64October, 2019
  • 59September, 2020
  • 58May, 2020
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • 123tsv
  • 106bed narrowPeak
  • 64xls
  • 57txt
  • bam
  • 47bigWig
  • 24tagAlign
  • 5bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 269Homo sapiens
Biosample type
  • 229tissue
  • 36cell line
  • 5in vitro differentiated cells
Organ
  • 130kidney
  • 92heart
  • 31liver
  • 6blood vessel
  • 6vasculature
  • 5connective tissue
  • 4pancreas
  • 2artery
  • 2epithelium
  • 1adipose tissue
Project
  • 270AMP
Genome assembly (visualization)
  • 64GRCh38
  • 20hg19
Lab
  • 128Katalin Susztak, Upenn
  • 102AMP-T2D consortium
  • 36Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

270 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
cell line
HepG2918211
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
neural progenitor cell1
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