Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
15
RRBS
9
WGBS
6
Hi-C
4
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
31
DNA accessibility
24
DNA methylation
18
Transcription
6
3D chromatin structure
Date released
264
August, 2021
176
May, 2022
170
February, 2023
143
February, 2021
129
August, 2017
122
May, 2021
63
October, 2019
59
September, 2020
58
May, 2020
47
September, 2023
45
March, 2020
40
May, 2024
24
July, 2019
22
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
570
bigWig
567
tsv
89
txt
45
fastq
22
bed bedMethyl
22
bigBed bedMethyl
16
bed narrowPeak
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
2
bigBed narrowPeak
2
hdf5
2
tagAlign
Organism
167
Homo sapiens
Biosample type
106
tissue
56
primary cell
4
in vitro differentiated cells
1
cell line
Organ
84
bone element
14
epithelium
12
kidney
8
pancreas
6
connective tissue
5
brain
5
liver
5
musculature of body
4
heart
4
limb
3
vasculature
blood vessel
1
eye
1
pericardium
Project
122
AMP
45
HPAP
Genome assembly (visualization)
22
hg19
Lab
122
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
86
inconsistent ontology term
32
audit script error
files.file_type!
bam
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
167 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
1
gastrocnemius medialis
4
heart left ventricle
1
2
brain
1
+ See 8 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
astrocyte of the cerebellum
1
brain pericyte
1
cardiac fibroblast
1
+ See 8 more…
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
See all biosamples
Download