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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
9
Hi-C
7
ChIP-seq
3
WGBS
1
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
18
DNA methylation
9
3D chromatin structure
7
DNA binding
4
Transcription
1
DNA accessibility
Target of assay
6
histone
6
histone modification
5
broad histone mark
1
control
1
narrow histone mark
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
99
bigWig
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
19
bed narrowPeak
17
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
1
hic
Organism
35
Homo sapiens
Biosample type
21
tissue
14
primary cell
2
cell line
2
stem cell
Organ
12
brain
8
epithelium
5
musculature of body
4
heart
4
kidney
4
limb
3
liver
3
pancreas
3
vasculature
2
blood vessel
2
connective tissue
1
eye
1
pericardium
Project
34
AMP
4
community
1
ITG
Genome assembly (visualization)
20
hg19
2
GRCh38
Lab
33
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
39 results
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Clear Filters
RRBS
Hi-C
ChIP-seq
WGBS
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
brain
1
7
gastrocnemius medialis
4
heart left ventricle
1
2
islet of Langerhans
1
1
kidney
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 9 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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