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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32pCHi-C
  • 10Hi-C
  • 4ATAC-seq
  • 2total RNA-seq
Assay category
  • 103D chromatin structure
  • 4DNA accessibility
  • 2Transcription
Date released
  • 270August, 2021
  • 205February, 2023
  • 176May, 2022
  • 143February, 2021
  • 129August, 2017
  • 122May, 2021
  • 64October, 2019
  • 59September, 2020
  • 58May, 2020
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • 45tsv
  • 20bigWig
  • bam
  • 12bedpe bed3+
  • 10hic
  • 3bed narrowPeak
  • 2ibed
Organism
  • 48Homo sapiens
Biosample type
  • 31tissue
  • 6cell line
  • 6in vitro differentiated cells
  • 4stem cell
  • 1primary cell
Organ
  • 8pancreas
  • 5heart
  • 3blood vessel
  • 3epithelium
  • 3musculature of body
  • 3vasculature
  • 2brain
  • 2connective tissue
  • 2intestine
  • 2kidney
  • 2liver
  • 1adipose tissue
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 46AMP
  • 2T1D
Genome assembly (visualization)
  • 16hg19
Lab
  • 48AMP-T2D consortium
Audit category:
  • 12inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

48 results

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Clear Filters
pCHi-C
Hi-C
ATAC-seq
total RNA-seq
tissue
islet of Langerhans22
psoas muscle12
aorta11
heart left ventricle11
heart right ventricle11
cell line
EndoC_BH12
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
embryonic stem cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
primary cell
endothelial cell of umbilical vein1
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