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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
22
total RNA-seq
1
pCHi-C
Assay category
136
DNA accessibility
56
Transcription
41
DNA methylation
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
280
bigWig
189
tsv
134
zippedFastqFolder
65
bed narrowPeak
50
tagAlign
24
fastq
7
txt
1
bed bed3+
Organism
234
Homo sapiens
Biosample type
191
primary cell
42
tissue
1
cell line
Organ
80
epithelium
80
pancreas
41
liver
2
musculature of body
Project
134
HPAP
100
AMP
Genome assembly (visualization)
21
hg19
Lab
134
Klaus Kaestner, Upenn
60
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
audit script error
files.file_type!
bam
month_released!
November, 2017
BIOSAMPLE
ASSAY
234 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
+ See 3 more…
tissue
liver
20
20
skeletal muscle tissue
1
1
cell line
HepG2
1
See all biosamples
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