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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74ChIP-seq
  • 21ATAC-seq
  • 17pCHi-C
  • 9total RNA-seq
  • 1DNAme array
Assay category
  • 74DNA binding
  • 21DNA accessibility
  • 9Transcription
  • 1DNA methylation
Target of assay
  • 54histone
  • 54histone modification
  • 32broad histone mark
  • 22narrow histone mark
  • 12transcription factor
  • 8control
  • 5RNA binding protein
Date released
  • 270August, 2021
  • 205February, 2023
  • 176May, 2022
  • 143February, 2021
  • 129August, 2017
  • 122May, 2021
  • 64October, 2019
  • 59September, 2020
  • 58May, 2020
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • 303bigWig
  • bam
  • 173tsv
  • 133bed narrowPeak
  • 90tagAlign
  • 2bed bed3+
Organism
  • 122Homo sapiens
Biosample type
  • 57primary cell
  • 47in vitro differentiated cells
  • 16cell line
  • 2tissue
Organ
  • 17pancreas
  • 16epithelium
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 105AMP
  • 17T1D
Genome assembly (visualization)
  • 40hg19
Lab
  • 100Kyle Gaulton, UCSD
  • 22AMP-T2D consortium
Audit category:
  • 17inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

122 results

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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell3312
monocyte1111
naive thymus-derived CD4-positive, alpha-beta T cell21
CD4-positive, alpha-beta T cell2
neutrophil11
in vitro differentiated cells
embryonic stem cell3755
cell line
EndoC_BH116
tissue
pancreas1
thymus1
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