Experiment Matrix

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BIOSAMPLE

	ASSAY
1497 results Clear Filters	ATAC-seq	ChIP-seq	single cell RNA-seq	total RNA-seq	RNA microarray	snATAC-seq	WGBS	pCHi-C	Hi-C	RRBS	MeRIP-seq	GRO-seq	STARR-seq	Capture-C	CRISPR genome editing followed by DNA sequencing	DNase-seq	snDrop-seq	HiChIP	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	CRISPRi RNA-seq	DNAme array	MPRA	shRNA RNA-seq	siRNA RNA-seq	whole genome sequencing assay
tissue
kidney	75		64	49		6			1	1
islet of Langerhans	29	41		26		7		4	3	1	4
bone element					84
liver	20	23	1	20			3	1	1	1
left cardiac atrium		40	18
subcutaneous abdominal adipose tissue		36					3
coronary artery	35			1
skeletal muscle tissue	1	22	1			2				4
heart left ventricle		1	18				2	1	1	1
lung			9			10		1
heart right ventricle			17					1	1
right cardiac atrium			18					1
retina	15			3
pigmented layer of retina	12			2
pancreas				1		4		1	1	1
adipose tissue	3			1			1	1
aorta			4					1	1
gastrocnemius medialis				1					4
aortic valve			4
pulmonary valve			4
tricuspid valve			4
mitral valve			3
psoas muscle								1	2
right lobe of liver				1			1									1
acetabular part of hip bone	1			1
cardiac atrium			2
cardiac ventricle			2
heart			1						1
ilium	1			1
interventricular septum			2
ischium	1			1
pubis	1			1
pulmonary artery			2
subcutaneous adipose tissue				1	1
thymus								2
C1 segment of cervical spinal cord				1
adrenal gland								1
ascending aorta				1
bladder (urinary bladder)								1
body of pancreas				1
esophagus								1
gastric (mucosa of stomach)								1
kidney (Cortex-Medulla)																	1
kidney (cortex)																	1
kidney (medulla)																	1
kidney interstitium					1
left ventricle myocardium				1
omental fat pad				1
ovary								1
pericardium										1
renal glomerulus					1
right atrium auricular region				1
sigmoid colon								1
small intestine								1
spleen								1
tibial artery				1
tibial nerve				1
primary cell
Langerhans cell			85			48
pancreatic alpha cell	29			42			31		1
pancreatic beta cell	16			11			16		1
exocrine cell				39
CD8-positive, alpha-beta T cell		33		2				1
naive thymus-derived CD4-positive, alpha-beta T cell	22	2		1				1
CD4-positive, alpha-beta memory T cell	22
macrophage	11							1
peripheral blood mononuclear cell						8
pancreatic acinar cell	4								1
monocyte		1		1				1														1
gabaergic neuron	3
glutamatergic neuron	3
microglial cell/astrocyte	3
neutrophil		1		1				1
oligodendrocyte	3
CD4-positive, alpha-beta T cell								2
endothelial cell of umbilical vein									2
pancreatic cell			2
B cell								1
activated CD4-positive, alpha-beta T cell								1
adult endothelial progenitor cell								1
alternatively activated macrophage								1
cardiac fibroblast										1
cardiac muscle cell										1
chondrocytes									1
endothelial cell of hepatic sinusoid									1
epithelial cell of proximal tubule										1
erythroblast								1
hepatocyte										1
inflammatory macrophage								1
kidney epithelial cell										1
kidney glomerular epithelial cell																1
kidney tubule cell																1
megakaryocyte								1
naive B cel								1
naive thymus-derived CD8-positive, alpha-beta T cell								1
renal cortical epithelial cell										1
retinal pigment epithelial cell										1
skeletal muscle cell										1
skeletal muscle myoblast										1
in vitro differentiated cells
embryonic stem cell	6	37		5				1
adipocyte	8	14		1										1
cardiomyocytes (cardiac muscle cell)			2					2	2
chondrocyte	5
immature adipocyte	2			2
lymphocyte of B lineage (iPSC)								1	1
osteoblast	1													1
preadipocyte	1			1
Posterior foregut												1
Progenitor cell of Hypothalamus (neural progenitor cell)	1
cardiac precursors (cardiac muscle cell)									1
definitive endodermal cell												1
neural progenitor cell		1
neuron cell of Hypothalamus (neuron)	1
pancreatic endoderm												1
primitive gut cell												1
white fat cell								1
cell line
HepG2		19		9				2	2				2													1
EndoC_BH1	18								1		6			2	3			2		1
EndoC-BH1																								1	1
HEK293T													2
GM12878	1
MCF-7								1
MIN6																							1
Panc1									1
RCC 7860 VHL								1
RCC 7860 vector								1
Synthesized DNA													1
fibroblast cell line								1
stem cell
SB Ad3.1																			1		1
hESC												1
mesenchymal stem cell								1
mesendoderm								1
neural progenitor cell (neural stem cell)								1
trophoblast								1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

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1497 results