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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 336ATAC-seq
  • 262single cell RNA-seq
  • 251ChIP-seq
  • 215total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 53WGBS
  • 53pCHi-C
  • 30Hi-C
  • 19RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3STARR-seq
  • 3snDrop-seq
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 481Transcription
  • 422DNA accessibility
  • 251DNA binding
  • 73DNA methylation
  • 303D chromatin structure
Target of assay
  • 209histone
  • 209histone modification
  • 110broad histone mark
  • 99narrow histone mark
  • 30control
  • 17transcription factor
  • 10RNA binding protein
  • 5nucleotide modification
Date released
  • 239August, 2021
  • 205February, 2023
  • 141February, 2021
  • 136May, 2022
  • 122May, 2021
  • 101August, 2017
  • 64October, 2019
  • 59September, 2020
  • 57May, 2020
  • 47September, 2023
  • 46March, 2020
  • 40May, 2024
  • 24February, 2020
  • 23July, 2019
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 13November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1November, 2018
  • 1September, 2018
Available data
  • bam
  • 2547bigWig
  • 1426tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 260bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 1421Homo sapiens
Biosample type
  • 797tissue
  • 477primary cell
  • 103in vitro differentiated cells
  • 45cell line
  • 7stem cell
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 976AMP
  • 324HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 175hg19
  • 168GRCh38
  • 5hg18
Lab
  • 686AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 139Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 141inconsistent ontology term
  • 42audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
organ_slims!
  • liver
BIOSAMPLE
ASSAY

1429 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
snDrop-seq
DNase-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 5 more
tissue
kidney756449611
islet of Langerhans30412674314
bone element84
left cardiac atrium1840
subcutaneous abdominal adipose tissue363
primary cell
Langerhans cell8548
pancreatic alpha cell2942311
pancreatic beta cell1611161
exocrine cell39
CD8-positive, alpha-beta T cell3321
in vitro differentiated cells
embryonic stem cell63751
adipocyte81411
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
cell line
EndoC_BH118162321
EndoC-BH1
HEK293T2
GM128781
MCF-71
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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