Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 273ChIP-seq
  • 269ATAC-seq
  • 263single cell RNA-seq
  • 178total RNA-seq
  • 87RNA microarray
  • 73snATAC-seq
  • 55pCHi-C
  • 25Hi-C
  • 19RRBS
  • 10WGBS
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 445Transcription
  • 345DNA accessibility
  • 273DNA binding
  • 30DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 218histone
  • 218histone modification
  • 115broad histone mark
  • 103narrow histone mark
  • 29transcription factor
  • 26control
  • 11RNA binding protein
Date released
  • 266August, 2021
  • 149February, 2023
  • 137February, 2021
  • 109August, 2017
  • 105May, 2021
  • 96May, 2022
  • 60October, 2019
  • 58May, 2020
  • 47September, 2023
  • 40March, 2020
  • 40May, 2024
  • 40September, 2020
  • 24February, 2020
  • 24July, 2019
  • 19April, 2020
  • 15May, 2023
  • 14November, 2017
  • 8January, 2018
  • 8January, 2021
  • 7October, 2017
  • 5December, 2019
  • 5March, 2023
  • 1April, 2019
  • 1August, 2018
  • 1December, 2018
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1275Homo sapiens
Biosample type
  • 794tissue
  • 327primary cell
  • 103in vitro differentiated cells
  • 51cell line
  • 7stem cell
Organ
  • pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1009AMP
  • 172HPAP
  • 47KPMP
  • 30T1D
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 192hg19
  • 154GRCh38
  • 5hg18
Lab
  • 664AMP-T2D consortium
  • 172Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 112Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 34Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 114inconsistent ontology term
  • 38audit script error
Audit category:
  • 1missing controlled_by
files.file_type!
  • bam
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

1282 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
...and 4 more
tissue
kidney756449611
bone element84
liver23201201113
left cardiac atrium4018
islet of Langerhans2110144
primary cell
Langerhans cell8548
exocrine cell39
CD8-positive, alpha-beta T cell3321
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
embryonic stem cell37651
adipocyte14811
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
cell line
HepG2199222
EndoC_BH132
EndoC-BH1
HEK293T2
GM128781
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego