Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
6
Hi-C
5
RRBS
5
total RNA-seq
4
ATAC-seq
4
WGBS
3
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
58
DNA binding
9
DNA methylation
6
3D chromatin structure
6
Transcription
5
DNA accessibility
Target of assay
50
histone
50
histone modification
32
broad histone mark
18
narrow histone mark
8
control
Date released
66
August, 2017
5
July, 2019
4
February, 2020
4
March, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
October, 2019
Available data
bam
493
bigWig
410
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
46
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
87
Homo sapiens
Biosample type
86
tissue
1
in vitro differentiated cells
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
25
hg19
1
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
organ_slims!
ovary
BIOSAMPLE
ASSAY
88 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
1
1
1
adipose tissue
1
3
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
+ See 3 more…
in vitro differentiated cells
white fat cell
1
primary cell
skeletal muscle cell
1
See all biosamples
Download