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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
30
ChIP-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
34
Transcription
30
DNA binding
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
28
August, 2017
22
August, 2021
3
July, 2019
2
February, 2020
2
February, 2021
2
March, 2020
1
December, 2018
1
May, 2020
Available data
bam
310
bigWig
177
tsv
138
fastq
133
bed narrowPeak
86
tagAlign
64
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
101
Homo sapiens
Biosample type
76
tissue
23
cell line
2
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
heart
98
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
29
hg19
Lab
41
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
files.file_type!
bam
organ_slims!
heart
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
single cell RNA-seq
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
tissue
liver
20
23
20
1
3
1
1
1
right lobe of liver
1
1
1
pulmonary artery
2
tibial artery
1
cell line
HepG2
9
7
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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