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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
22
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
snATAC-seq
Assay category
37
DNA accessibility
22
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
35
February, 2023
26
August, 2017
5
July, 2019
4
February, 2020
4
March, 2020
2
August, 2021
2
May, 2022
1
January, 2018
Available data
bam
148
bigWig
129
bed narrowPeak
71
bigBed narrowPeak
68
tsv
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
17
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
79
Homo sapiens
Biosample type
78
tissue
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
177
heart
98
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
35
GRCh38
20
hg19
Lab
79
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
single cell RNA-seq
pCHi-C
snATAC-seq
tissue
coronary artery
35
1
skeletal muscle tissue
1
22
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
pulmonary artery
2
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primary cell
skeletal muscle cell
1
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