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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
3
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
2
July, 2019
2
March, 2020
Available data
bam
135
bigWig
116
bed narrowPeak
68
tsv
66
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tagAlign
3
fastq
2
hdf5
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
48
Homo sapiens
Biosample type
46
tissue
2
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
35
GRCh38
3
hg19
Lab
48
AMP-T2D consortium
files.file_type!
bam
organ_slims!
skin of body
vein
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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