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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
22
ChIP-seq
15
total RNA-seq
7
Hi-C
6
single cell RNA-seq
3
pCHi-C
2
RRBS
Assay category
37
DNA accessibility
22
DNA binding
21
Transcription
7
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
36
February, 2023
15
February, 2020
13
November, 2017
7
October, 2017
6
August, 2021
6
July, 2019
5
March, 2020
4
October, 2019
Available data
bam
367
bigWig
329
bed narrowPeak
203
bigBed narrowPeak
124
tagAlign
94
tsv
57
bed broadPeak
48
bigBed broadPeak
44
bed bed3+
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
92
Homo sapiens
Biosample type
85
tissue
7
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
37
GRCh38
13
hg19
Lab
92
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
92 results
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ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
RRBS
tissue
coronary artery
35
1
brain
1
7
1
aorta
1
4
1
cingulate gyrus
6
layer of hippocampus
3
+ See 20 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
+ See 1 more…
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