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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
RNA microarray
51
ChIP-seq
24
ATAC-seq
11
total RNA-seq
5
pCHi-C
4
WGBS
2
Capture-C
1
RRBS
Assay category
51
DNA binding
24
DNA accessibility
11
Transcription
5
DNA methylation
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
88
February, 2021
54
August, 2017
22
February, 2023
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
July, 2019
1
May, 2023
Available data
bam
568
bigWig
478
tsv
101
fastq
88
txt
82
bed narrowPeak
27
bigBed narrowPeak
25
bed bed3+
22
tagAlign
10
bed bed3
9
bed broadPeak
8
bigBed broadPeak
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
182
Homo sapiens
Biosample type
141
tissue
38
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
257
pancreas
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
181
AMP
2
T1D
Genome assembly (visualization)
29
hg19
1
GRCh38
Lab
177
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
2
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
files.file_type!
bam
organ_slims!
brain
kidney
BIOSAMPLE
ASSAY
183 results
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Clear Filters
RNA microarray
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
RRBS
tissue
bone element
84
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
1
acetabular part of hip bone
1
1
ilium
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
14
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
adult endothelial progenitor cell
1
cardiac fibroblast
1
megakaryocyte
1
stem cell
mesenchymal stem cell
1
See all biosamples
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