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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
63
ATAC-seq
43
ChIP-seq
22
total RNA-seq
8
pCHi-C
3
Hi-C
3
RRBS
2
WGBS
Assay category
115
Transcription
63
DNA accessibility
43
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
38
histone
38
histone modification
20
broad histone mark
18
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
67
February, 2023
40
May, 2024
22
October, 2019
5
July, 2019
5
March, 2020
4
February, 2020
1
April, 2019
1
May, 2021
Available data
230
bigWig
224
bed narrowPeak
bam
173
tsv
100
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
237
Homo sapiens
Biosample type
234
tissue
3
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
236
AMP
1
T1D
Genome assembly (visualization)
75
GRCh38
34
hg19
Lab
196
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
237 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
1
2
islet of Langerhans
1
2
14
4
heart right ventricle
17
1
1
+ See 13 more…
primary cell
cardiac fibroblast
1
megakaryocyte
1
retinal pigment epithelial cell
1
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