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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 22ChIP-seq
  • 12total RNA-seq
  • 3Hi-C
  • 2ATAC-seq
  • 2RRBS
  • 2pCHi-C
Assay category
  • 22DNA binding
  • 12Transcription
  • 33D chromatin structure
  • 2DNA accessibility
  • 2DNA methylation
Target of assay
  • 21histone
  • 21histone modification
  • 12narrow histone mark
  • 9broad histone mark
  • 1control
Date released
  • 13November, 2017
  • 12February, 2020
  • 7October, 2017
  • 5July, 2019
  • 3October, 2019
  • 2March, 2020
  • 1February, 2023
Available data
  • bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 43Homo sapiens
Biosample type
  • 39tissue
  • 4primary cell
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 40musculature of body
  • 39artery
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 43AMP
Genome assembly (visualization)
  • 9hg19
  • 2GRCh38
Lab
  • 43AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 1missing controlled_by
files.file_type!
  • bam
BIOSAMPLE
ASSAY

43 results

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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain711
cingulate gyrus6
layer of hippocampus3
substantia nigra21
Ammon's horn11
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
choroid plexus epithelial cell1
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