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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 51ChIP-seq
  • 20ATAC-seq
  • 7total RNA-seq
  • 4WGBS
  • 4pCHi-C
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 51DNA binding
  • 20DNA accessibility
  • 7Transcription
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 44histone
  • 44histone modification
  • 28broad histone mark
  • 16narrow histone mark
  • 7control
Date released
  • 54August, 2017
  • 14February, 2023
  • 5August, 2021
  • 4February, 2021
  • 4October, 2019
  • 2February, 2020
  • 2July, 2019
  • 2March, 2020
  • 1August, 2018
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
Available data
  • bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 90Homo sapiens
Biosample type
  • 49tissue
  • 38in vitro differentiated cells
  • 3primary cell
  • 1stem cell
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 90AMP
  • 1T1D
Genome assembly (visualization)
  • 26hg19
  • 1GRCh38
Lab
  • 86AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 6inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

91 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue363
adipose tissue3111
subcutaneous adipose tissue11
islet of Langerhans1
omental fat pad1
in vitro differentiated cells
adipocyte14811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
adult endothelial progenitor cell1
brain pericyte1
cardiac fibroblast1
stem cell
mesenchymal stem cell1
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