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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ATAC-seq
  • 55total RNA-seq
  • 47WGBS
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 2DNase-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 81DNA accessibility
  • 55Transcription
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 3control
  • 3nucleotide modification
Date released
  • 80May, 2022
  • 52February, 2023
  • 19September, 2020
  • 16May, 2021
  • 8July, 2019
  • 7August, 2020
  • 6February, 2021
  • 6November, 2020
  • 3March, 2020
  • 3October, 2019
  • 3October, 2022
  • 2August, 2021
  • 1December, 2019
  • 1November, 2019
Available data
  • bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 206Homo sapiens
Biosample type
  • 164primary cell
  • 28cell line
  • 15tissue
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 152HPAP
  • 55AMP
Genome assembly (visualization)
  • 28hg19
  • 10GRCh38
Lab
  • 152Klaus Kaestner, Upenn
  • 49AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 28inconsistent ontology term
  • 5audit script error
files.file_type!
  • bam
BIOSAMPLE
ASSAY

207 results

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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell2942311
pancreatic beta cell1611161
pancreatic acinar cell41
endothelial cell of umbilical vein2
brain microvascular endothelial cell1
cell line
EndoC_BH1181621
tissue
pigmented layer of retina122
renal glomerulus1
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