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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
single cell RNA-seq
35
ATAC-seq
21
ChIP-seq
10
snATAC-seq
4
pCHi-C
3
Hi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
105
Transcription
45
DNA accessibility
21
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
36
histone
36
histone modification
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
36
February, 2023
20
May, 2024
19
April, 2020
6
March, 2020
4
July, 2019
3
February, 2020
1
April, 2019
1
October, 2019
Available data
bam
169
tsv
167
bigWig
134
bed narrowPeak
60
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
181
Homo sapiens
Biosample type
181
tissue
1
primary cell
Organ
249
pancreas
210
kidney
207
epithelium
162
heart
97
liver
93
bone element
63
connective tissue
54
eye
51
vasculature
50
blood vessel
39
artery
34
brain
29
adipose tissue
27
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
163
AMP
19
LungMap
Genome assembly (visualization)
55
GRCh38
6
hg19
Lab
143
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bam
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
182 results
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Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
total RNA-seq
RRBS
WGBS
tissue
left cardiac atrium
18
20
coronary artery
35
1
heart left ventricle
18
1
1
1
1
2
lung
9
10
1
heart right ventricle
17
1
1
+ See 11 more…
primary cell
cardiac fibroblast
1
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