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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
67
ChIP-seq
36
ATAC-seq
11
Hi-C
7
RRBS
5
pCHi-C
4
total RNA-seq
2
WGBS
1
snATAC-seq
Assay category
98
Transcription
67
DNA binding
37
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
59
histone
59
histone modification
32
broad histone mark
27
narrow histone mark
5
RNA binding protein
5
transcription factor
3
control
Date released
92
August, 2021
40
May, 2024
36
February, 2023
26
August, 2017
10
March, 2020
9
July, 2019
6
October, 2019
4
February, 2020
2
May, 2022
1
April, 2019
1
January, 2018
Available data
307
bigWig
bam
264
bed narrowPeak
177
tsv
154
bigBed narrowPeak
80
bed broadPeak
67
bigBed broadPeak
66
bed bed3+
21
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
7
hic
6
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
227
Homo sapiens
Biosample type
223
tissue
4
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
227
AMP
Genome assembly (visualization)
75
GRCh38
28
hg19
Lab
187
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
audit script error
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
227 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
total RNA-seq
WGBS
snATAC-seq
tissue
left cardiac atrium
18
40
coronary artery
35
1
skeletal muscle tissue
1
22
1
4
1
heart left ventricle
18
1
1
1
1
2
heart right ventricle
17
1
1
+ See 15 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
skeletal muscle cell
1
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