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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
113
Transcription
81
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
130
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
2
December, 2019
2
March, 2020
1
July, 2019
Available data
160
bed narrowPeak
bam
101
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
204
Homo sapiens
Biosample type
200
tissue
4
cell line
Organ
257
pancreas
210
kidney
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
157
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
2
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
13
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
audit script error
2
inconsistent ontology term
files.file_type!
bam
organ_slims!
epithelium
pericardium
BIOSAMPLE
ASSAY
204 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
Hi-C
RNA microarray
RRBS
tissue
kidney
75
64
49
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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