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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 49total RNA-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2DNase-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1Hi-C
Assay category
  • 113Transcription
  • 83DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Date released
  • 130August, 2021
  • 47September, 2023
  • 14May, 2023
  • 8February, 2021
  • 4July, 2019
  • 3December, 2019
  • 2March, 2020
  • 2October, 2019
Available data
  • 183bed narrowPeak
  • bam
  • 131bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 210Homo sapiens
Biosample type
  • 201tissue
  • 5primary cell
  • 4cell line
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 163AMP
  • 47KPMP
Genome assembly (visualization)
  • 75GRCh38
  • 5hg19
Lab
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 19AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 7audit script error
  • 3inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

210 results

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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney756449611
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
kidney interstitium1
primary cell
epithelial cell of proximal tubule1
kidney epithelial cell1
kidney glomerular epithelial cell1
kidney tubule cell1
renal cortical epithelial cell1
cell line
HEK293T2
RCC 7860 VHL1
RCC 7860 vector1
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