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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
31
Transcription
21
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
28
August, 2017
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
July, 2019
1
May, 2020
1
November, 2017
Available data
bam
598
bigWig
450
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
108
Homo sapiens
Biosample type
73
tissue
35
cell line
Organ
256
pancreas
210
kidney
epithelium
182
heart
110
liver
93
bone element
90
connective tissue
54
eye
51
vasculature
50
blood vessel
48
adipose tissue
43
brain
39
artery
39
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
38
hg19
Lab
40
Karen Mohlke, UNC
37
AMP-T2D consortium
31
Bing Ren, UCSD
files.file_type!
bam
organ_slims!
epithelium
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
3
1
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
19
9
2
2
2
1
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