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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
30
DNA binding
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
28
August, 2017
20
August, 2021
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
Available data
bam
289
bigWig
174
tsv
138
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
98
Homo sapiens
Biosample type
73
tissue
23
cell line
2
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
177
heart
98
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
98
AMP
Genome assembly (visualization)
29
hg19
Lab
40
Karen Mohlke, UNC
38
AMP-T2D consortium
20
Bing Ren, UCSD
files.file_type!
bam
organ_slims!
mammary gland
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
7
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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