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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 42ChIP-seq
  • 30total RNA-seq
  • 20ATAC-seq
  • 4Hi-C
  • 4WGBS
  • 3pCHi-C
  • 2RRBS
  • 2STARR-seq
  • 1DNase-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 42DNA binding
  • 31Transcription
  • 21DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 23histone
  • 23histone modification
  • 13broad histone mark
  • 12transcription factor
  • 10narrow histone mark
  • 7control
  • 1RNA binding protein
Date released
  • 40May, 2022
  • 31August, 2021
  • 28August, 2017
  • 3July, 2019
  • 2February, 2021
  • 2March, 2020
  • 1December, 2018
  • 1February, 2020
  • 1May, 2020
  • 1November, 2017
Available data
  • bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 110Homo sapiens
Biosample type
  • 73tissue
  • 35cell line
  • 2primary cell
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 110AMP
Genome assembly (visualization)
  • 40hg19
Lab
  • 40Karen Mohlke, UNC
  • 39AMP-T2D consortium
  • 31Bing Ren, UCSD
files.file_type!
  • bam
BIOSAMPLE
ASSAY

110 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver23202013111
right lobe of liver111
cell line
HepG21992221
primary cell
endothelial cell of hepatic sinusoid1
hepatocyte1
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