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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 22ChIP-seq
  • 6Hi-C
  • 5RRBS
  • 2total RNA-seq
  • 1ATAC-seq
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 22DNA binding
  • 63D chromatin structure
  • 5DNA methylation
  • 3Transcription
  • 2DNA accessibility
Target of assay
  • 19histone
  • 19histone modification
  • 12broad histone mark
  • 7narrow histone mark
  • 3control
Date released
  • 26August, 2017
  • 5July, 2019
  • 3March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 68bigWig
  • 60bed narrowPeak
  • bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 39Homo sapiens
Biosample type
  • 38tissue
  • 1primary cell
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 39AMP
Genome assembly (visualization)
  • 20hg19
Lab
  • 39AMP-T2D consortium
Audit category:
  • 1audit script error
files.file_type!
  • bam
BIOSAMPLE
ASSAY

39 results

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Clear Filters
ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue224111
gastrocnemius medialis41
psoas muscle21
left ventricle myocardium1
primary cell
skeletal muscle cell1
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