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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 87ATAC-seq
  • 67total RNA-seq
  • 47WGBS
  • 20ChIP-seq
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 2Capture-C
  • 2RRBS
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 98DNA accessibility
  • 67Transcription
  • 49DNA methylation
  • 20DNA binding
  • 93D chromatin structure
Target of assay
  • 14histone
  • 14histone modification
  • 11control
  • 8broad histone mark
  • 6narrow histone mark
  • 5nucleotide modification
Date released
  • 80May, 2022
  • 56February, 2023
  • 20August, 2017
  • 19September, 2020
  • 17May, 2021
  • 10November, 2020
  • 8January, 2021
  • 8March, 2020
  • 7August, 2020
  • 6February, 2021
  • 4August, 2021
  • 4July, 2018
  • 4March, 2019
  • 4October, 2019
  • 3October, 2022
  • 2July, 2019
  • 2November, 2019
  • 1August, 2022
  • 1February, 2020
  • 1October, 2017
Available data
  • bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 256Homo sapiens
Biosample type
  • 152primary cell
  • 76tissue
  • 29cell line
Organ
  • 257pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 91connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 152HPAP
  • 77AMP
  • 28T1D
Genome assembly (visualization)
  • 23hg19
  • 14GRCh38
Lab
  • 152Klaus Kaestner, Upenn
  • 61AMP-T2D consortium
  • 27Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

257 results

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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell2942311
pancreatic beta cell1611161
pancreatic acinar cell41
tissue
islet of Langerhans2012207431
pancreas14111
body of pancreas1
cell line
EndoC_BH1186121
Panc11
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