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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
36
DNA accessibility
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
October, 2019
Available data
bam
87
bigWig
68
tsv
67
bed narrowPeak
17
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
52
Homo sapiens
Biosample type
47
tissue
5
primary cell
Organ
243
pancreas
210
kidney
207
epithelium
146
heart
93
bone element
87
liver
52
eye
51
vasculature
50
blood vessel
47
connective tissue
39
artery
22
brain
lung
20
musculature of body
18
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
organ_slims!
lung
target.investigated_as!
histone
BIOSAMPLE
ASSAY
52 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
islet of Langerhans
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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