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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 86RNA microarray
  • 83snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 508Transcription
  • 442DNA accessibility
  • 293DNA binding
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 37control
  • 29transcription factor
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 269August, 2021
  • 204February, 2023
  • 176May, 2022
  • 143February, 2021
  • 129August, 2017
  • 122May, 2021
  • 64October, 2019
  • 59September, 2020
  • 58May, 2020
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 18April, 2020
  • 16January, 2021
  • 15May, 2023
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 4July, 2018
  • 4March, 2019
  • 3October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1March, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • bam
  • 3163bigWig
  • 1811bed narrowPeak
  • 1600tsv
  • 1351fastq
  • 1036bigBed narrowPeak
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1531Homo sapiens
Biosample type
  • 868tissue
  • 479primary cell
  • 103in vitro differentiated cells
  • 76cell line
  • 5stem cell
Organ
  • 256pancreas
  • 210kidney
  • 206epithelium
  • 182heart
  • 110liver
  • 93bone element
  • 90connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 48adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 19lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1083AMP
  • 324HPAP
  • 58T1D
  • 47KPMP
  • 18LungMap
  • 1ITG
Genome assembly (visualization)
  • 215hg19
  • 168GRCh38
  • 5hg18
Lab
  • 722AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 139Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 18Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 141inconsistent ontology term
  • 42audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1531 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
kidney756449611
islet of Langerhans30412674314
bone element84
liver20231203111
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell2942311
pancreatic beta cell1611161
exocrine cell39
CD8-positive, alpha-beta T cell3321
in vitro differentiated cells
embryonic stem cell63751
adipocyte81411
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
cell line
HepG21992221
EndoC_BH11816232
HEK293T2
GM128781
MCF-71
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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