Experiment Matrix – Common Metabolic Diseases Genome Atlas

Experiment Matrix

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BIOSAMPLE

	ASSAY
927 results Clear Filters	ATAC-seq	ChIP-seq	snATAC-seq	WGBS	pCHi-C	Hi-C	RRBS	GRO-seq	Capture-C	CRISPR genome editing followed by DNA sequencing	DNase-seq	HiChIP	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	CRISPRi RNA-seq	DNAme array	MPRA	RNA microarray	shRNA RNA-seq	siRNA RNA-seq	...and 1 more
tissue
islet of Langerhans	30	41	7		4	3	1
kidney	75		6			1	1
liver	20	23		3	1	1	1
left cardiac atrium		40
subcutaneous abdominal adipose tissue		36		3

primary cell
pancreatic alpha cell	29			31		1
Langerhans cell			48
CD8-positive, alpha-beta T cell		33			1
pancreatic beta cell	16			16		1
naive thymus-derived CD4-positive, alpha-beta T cell	22	2			1

in vitro differentiated cells
embryonic stem cell	6	37			1
adipocyte	8	14							1
chondrocyte	5
cardiomyocytes (cardiac muscle cell)					2	2
immature adipocyte	2

cell line
EndoC_BH1	18					1			2	3		2		1
HepG2		19			2	2
EndoC-BH1																			1	1
GM12878	1
MCF-7					1

stem cell
SB Ad3.1													1		1
hESC								1
mesenchymal stem cell					1
mesendoderm					1
neural progenitor cell (neural stem cell)					1