Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 83snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 442DNA accessibility
  • 293DNA binding
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 32control
  • 29transcription factor
  • 11RNA binding protein
Date released
  • 129August, 2017
  • 122May, 2022
  • 113May, 2021
  • 110February, 2023
  • 99August, 2021
  • 56May, 2020
  • 50October, 2019
  • 46March, 2020
  • 40May, 2024
  • 38February, 2021
  • 26July, 2019
  • 16January, 2021
  • 14November, 2017
  • 11May, 2023
  • 9April, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 4March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1March, 2023
Available data
  • bam
  • 1832bigWig
  • 1811bed narrowPeak
  • 1036bigBed narrowPeak
  • 985fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 919Homo sapiens
Biosample type
  • 471tissue
  • 295primary cell
  • 92in vitro differentiated cells
  • 56cell line
  • 5stem cell
Organ
  • 179pancreas
  • 144epithelium
  • 90kidney
  • 86heart
  • 83connective tissue
  • 77liver
  • 45adipose tissue
  • 42vasculature
  • 41blood vessel
  • 36musculature of body
  • 35artery
  • 35eye
  • 31brain
  • 10lung
  • 9blood
  • 9bodily fluid
  • 5bone element
  • 5gonad
  • 5limb
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 711AMP
  • 147HPAP
  • 51T1D
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 212hg19
  • 167GRCh38
  • 5hg18
Lab
  • 461AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 126Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 45inconsistent ontology term
  • 33audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

919 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
islet of Langerhans30417431
kidney75611
liver20233111
left cardiac atrium40
subcutaneous abdominal adipose tissue363
primary cell
pancreatic alpha cell29311
Langerhans cell48
CD8-positive, alpha-beta T cell331
pancreatic beta cell16161
naive thymus-derived CD4-positive, alpha-beta T cell2221
in vitro differentiated cells
embryonic stem cell6371
adipocyte8141
chondrocyte5
cardiomyocytes (cardiac muscle cell)22
immature adipocyte2
cell line
EndoC_BH1181232
HepG219221
GM128781
MCF-71
Panc11
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego