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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 309ATAC-seq
  • 270ChIP-seq
  • 259single cell RNA-seq
  • 197total RNA-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 57WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNase-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 460Transcription
  • 389DNA accessibility
  • 270DNA binding
  • 78DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 221histone
  • 221histone modification
  • 116broad histone mark
  • 105narrow histone mark
  • 34control
  • 18transcription factor
  • 6RNA binding protein
  • 3nucleotide modification
Date released
  • 263August, 2021
  • 174May, 2022
  • 158February, 2023
  • 140February, 2021
  • 129August, 2017
  • 92May, 2021
  • 59September, 2020
  • 57October, 2019
  • 56May, 2020
  • 47September, 2023
  • 40May, 2024
  • 26July, 2019
  • 19April, 2020
  • 19March, 2020
  • 15May, 2023
  • 14January, 2021
  • 14November, 2017
  • 8January, 2018
  • 7August, 2020
  • 6November, 2020
  • 5December, 2019
  • 4July, 2018
  • 4March, 2023
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1October, 2017
  • 1October, 2022
Available data
  • bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 1357Homo sapiens
Biosample type
  • 766tissue
  • 445primary cell
  • 80cell line
  • 68in vitro differentiated cells
  • 6stem cell
Organ
  • 218pancreas
  • 206kidney
  • 201epithelium
  • 174heart
  • 107liver
  • 85bone element
  • 73connective tissue
  • 53eye
  • 46vasculature
  • 45blood vessel
  • 44adipose tissue
  • 37artery
  • 34musculature of body
  • 21brain
  • 19lung
  • 7blood
  • 7bodily fluid
  • 5limb
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1embryo
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
  • 1vein
Project
  • 942AMP
  • 321HPAP
  • 47KPMP
  • 32T1D
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 181hg19
  • 163GRCh38
  • 5hg18
Lab
  • 614AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 95Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 34Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 128inconsistent ontology term
  • 38audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1365 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNase-seq
...and 5 more
tissue
kidney756449611
bone element84
islet of Langerhans1341185411
liver202320311
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell294231
pancreatic beta cell161116
exocrine cell39
CD8-positive, alpha-beta T cell332
cell line
HepG2199222
EndoC_BH118163221
EndoC-BH1
HEK293T2
GM128781
in vitro differentiated cells
embryonic stem cell226
adipocyte414
cardiomyocytes (cardiac muscle cell)212
chondrocyte5
immature adipocyte11
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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