Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 292ATAC-seq
  • 290ChIP-seq
  • 261single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 50WGBS
  • 35pCHi-C
  • 24Hi-C
  • 5GRO-seq
  • 4Capture-C
  • 4MeRIP-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 510Transcription
  • 372DNA accessibility
  • 290DNA binding
  • 53DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 34control
  • 26transcription factor
  • 11RNA binding protein
  • 2nucleotide modification
Date released
  • 260August, 2021
  • 199February, 2023
  • 176May, 2022
  • 132February, 2021
  • 125August, 2017
  • 109May, 2021
  • 61October, 2019
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 38March, 2020
  • 25February, 2020
  • 19April, 2020
  • 15May, 2023
  • 13January, 2021
  • 13November, 2017
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4November, 2020
  • 4October, 2022
  • 3December, 2019
  • 2May, 2020
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1November, 2018
  • 1September, 2018
Available data
  • bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1385Homo sapiens
Biosample type
  • 852tissue
  • 392primary cell
  • 88in vitro differentiated cells
  • 54cell line
  • 7stem cell
Organ
  • 237pancreas
  • 198kidney
  • 185epithelium
  • 180heart
  • 98liver
  • 92bone element
  • 84connective tissue
  • 53eye
  • 49adipose tissue
  • 48blood vessel
  • 48vasculature
  • 39artery
  • 38brain
  • 36musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2vein
  • 1adrenal gland
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 965AMP
  • 318HPAP
  • 47KPMP
  • 39T1D
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 173hg19
  • 167GRCh38
  • 5hg18
Lab
  • 623AMP-T2D consortium
  • 318Klaus Kaestner, Upenn
  • 138Katalin Susztak, Upenn
  • 120Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 32Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 119inconsistent ontology term
  • 40audit script error
Audit category:
  • 1missing controlled_by
files.file_type!
  • bam
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1393 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
GRO-seq
Capture-C
MeRIP-seq
DNase-seq
snDrop-seq
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
...and 5 more
tissue
kidney75644921
islet of Langerhans3041266434
bone element84
liver2023120311
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell2942251
pancreatic beta cell1611161
exocrine cell39
CD8-positive, alpha-beta T cell3321
in vitro differentiated cells
embryonic stem cell53751
adipocyte41411
chondrocyte5
immature adipocyte22
osteoblast11
cell line
HepG21691
EndoC_BH1161221
EndoC-BH1
GM128781
MIN6
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego