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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 111ATAC-seq
  • 48pCHi-C
  • 48total RNA-seq
  • 26ChIP-seq
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 10MeRIP-seq
  • 7WGBS
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 125DNA accessibility
  • 54Transcription
  • 27DNA methylation
  • 26DNA binding
  • 193D chromatin structure
Target of assay
  • 14transcription factor
  • 11histone
  • 11histone modification
  • 7broad histone mark
  • 6control
  • 5RNA binding protein
  • 5nucleotide modification
  • 4narrow histone mark
Date released
  • 58May, 2020
  • 53February, 2023
  • 43May, 2021
  • 39March, 2020
  • 25February, 2020
  • 20July, 2019
  • 17August, 2021
  • 14February, 2021
  • 10November, 2020
  • 10October, 2019
  • 7October, 2017
  • 5January, 2021
  • 4August, 2017
  • 4March, 2019
  • 3October, 2022
  • 2December, 2019
  • 2May, 2022
  • 1December, 2018
  • 1March, 2023
  • 1November, 2017
  • 1September, 2018
Available data
  • bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 320Homo sapiens
Biosample type
  • 122tissue
  • 121primary cell
  • 50in vitro differentiated cells
  • 26cell line
  • 1stem cell
Organ
  • 59pancreas
  • 28epithelium
  • 27brain
  • 25connective tissue
  • 16kidney
  • 15liver
  • 10heart
  • 9bone element
  • 8musculature of body
  • 8skeleton
  • 8vasculature
  • 7blood vessel
  • 5adipose tissue
  • 3limb
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2eye
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
  • 1vein
Project
  • 265AMP
  • 45T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 76hg19
  • 6GRCh38
Lab
  • 213AMP-T2D consortium
  • 63Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 35inconsistent ontology term
  • 6audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

320 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
pCHi-C
total RNA-seq
ChIP-seq
Hi-C
RRBS
snATAC-seq
MeRIP-seq
WGBS
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans1782134
brain161
kidney14
pancreas1112
skeletal muscle tissue211
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell22112
CD4-positive, alpha-beta memory T cell22
macrophage111
pancreatic alpha cell16
monocyte1111
in vitro differentiated cells
embryonic stem cell51511
adipocyte811
cardiomyocytes (cardiac muscle cell)222
immature adipocyte11
lymphocyte of B lineage (iPSC)11
cell line
EndoC_BH1263
HepG22312
HEK293T2
MCF-71
Panc11
stem cell
mesenchymal stem cell1
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