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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 48total RNA-seq
  • 47ATAC-seq
  • 27pCHi-C
  • 23ChIP-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 4single cell RNA-seq
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 54DNA accessibility
  • 52Transcription
  • 23DNA binding
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 11histone
  • 11histone modification
  • 11transcription factor
  • 7broad histone mark
  • 5RNA binding protein
  • 4narrow histone mark
  • 3control
  • 2nucleotide modification
Date released
  • 47February, 2023
  • 30May, 2021
  • 29March, 2020
  • 25February, 2020
  • 7August, 2021
  • 7October, 2017
  • 7October, 2019
  • 4March, 2019
  • 4November, 2020
  • 3February, 2021
  • 3October, 2022
  • 2January, 2021
  • 2May, 2020
  • 2May, 2022
  • 1March, 2023
  • 1September, 2018
Available data
  • bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 174Homo sapiens
Biosample type
  • 104tissue
  • 35in vitro differentiated cells
  • 34primary cell
  • 1stem cell
Organ
  • 39pancreas
  • 22brain
  • 18connective tissue
  • 8bone element
  • 8heart
  • 8skeleton
  • 6epithelium
  • 5adipose tissue
  • 5blood vessel
  • 5musculature of body
  • 5vasculature
  • 4kidney
  • 3limb
  • 3liver
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 144AMP
  • 26T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 34hg19
  • 5GRCh38
Lab
  • 111AMP-T2D consortium
  • 44Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 13inconsistent ontology term
  • 4audit script error
files.file_type!
  • bam
BIOSAMPLE
ASSAY

174 results

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Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
Hi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
Capture-C
DNase-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans817224
brain16
adipose tissue21
Ammon's horn11
acetabular part of hip bone11
in vitro differentiated cells
embryonic stem cell54111
adipocyte141
immature adipocyte11
osteoblast11
preadipocyte11
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell112
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
monocyte111
stem cell
mesenchymal stem cell1
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