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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 64ATAC-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 7WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3ChIP-seq
  • 2single cell RNA-seq
Assay category
  • 71DNA accessibility
  • 26DNA methylation
  • 103D chromatin structure
  • 3DNA binding
  • 2Transcription
Target of assay
  • 3control
  • 3nucleotide modification
  • 3transcription factor
Date released
  • 56May, 2020
  • 20July, 2019
  • 13May, 2021
  • 11February, 2021
  • 10August, 2021
  • 10March, 2020
  • 6February, 2023
  • 6November, 2020
  • 4August, 2017
  • 3January, 2021
  • 3October, 2019
  • 2December, 2019
  • 1December, 2018
  • 1November, 2017
Available data
  • bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 146Homo sapiens
Biosample type
  • 87primary cell
  • 26cell line
  • 18tissue
  • 15in vitro differentiated cells
Organ
  • 22epithelium
  • 20pancreas
  • 12kidney
  • 12liver
  • 7connective tissue
  • 5brain
  • 3musculature of body
  • 3vasculature
  • 2blood vessel
  • 2heart
  • 1bone element
  • 1bone marrow
  • 1eye
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 121AMP
  • 19T1D
  • 6HPAP
Genome assembly (visualization)
  • 42hg19
  • 1GRCh38
Lab
  • 102AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 22inconsistent ontology term
  • 2audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

146 results

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Clear Filters
ATAC-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
single cell RNA-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
pancreatic alpha cell6
CD4-positive, alpha-beta T cell2
cell line
EndoC_BH1263
HepG22123
HEK293T2
MCF-71
Panc11
tissue
kidney14
pancreas12
islet of Langerhans11
skeletal muscle tissue2
brain1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)122
adipocyte4
lymphocyte of B lineage (iPSC)11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cardiac precursors (cardiac muscle cell)1
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