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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 267ChIP-seq
  • 257single cell RNA-seq
  • 245ATAC-seq
  • 197total RNA-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 50WGBS
  • 15Hi-C
  • 8pCHi-C
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNase-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 458Transcription
  • 318DNA accessibility
  • 267DNA binding
  • 52DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Target of assay
  • 221histone
  • 221histone modification
  • 116broad histone mark
  • 105narrow histone mark
  • 31control
  • 15transcription factor
  • 6RNA binding protein
Date released
  • 253August, 2021
  • 174May, 2022
  • 152February, 2023
  • 129February, 2021
  • 125August, 2017
  • 79May, 2021
  • 59September, 2020
  • 54October, 2019
  • 47September, 2023
  • 40May, 2024
  • 19April, 2020
  • 15May, 2023
  • 13November, 2017
  • 11January, 2021
  • 9March, 2020
  • 8January, 2018
  • 7August, 2020
  • 6July, 2019
  • 4July, 2018
  • 4March, 2023
  • 3December, 2019
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1November, 2018
  • 1October, 2017
  • 1October, 2022
Available data
  • bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 1211Homo sapiens
Biosample type
  • 748tissue
  • 358primary cell
  • 54cell line
  • 53in vitro differentiated cells
  • 6stem cell
Organ
  • 198pancreas
  • 194kidney
  • 179epithelium
  • 172heart
  • 95liver
  • 84bone element
  • 66connective tissue
  • 52eye
  • 44adipose tissue
  • 43blood vessel
  • 43vasculature
  • 37artery
  • 31musculature of body
  • 19lung
  • 16brain
  • 7blood
  • 7bodily fluid
  • 5limb
  • 4gonad
  • 4ovary
  • 1embryo
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
  • 1vein
Project
  • 821AMP
  • 315HPAP
  • 47KPMP
  • 19LungMap
  • 13T1D
  • 4community
Genome assembly (visualization)
  • 162GRCh38
  • 139hg19
  • 5hg18
Lab
  • 512AMP-T2D consortium
  • 315Klaus Kaestner, Upenn
  • 138Katalin Susztak, Upenn
  • 76Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 106inconsistent ontology term
  • 36audit script error
Audit category:
  • 1missing controlled_by
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1219 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
GRO-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNase-seq
MPRA
STARR-seq
shRNA RNA-seq
...and 3 more
tissue
kidney64754921
bone element84
islet of Langerhans411318414
liver23202031
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell294225
pancreatic beta cell161116
exocrine cell39
CD8-positive, alpha-beta T cell332
cell line
HepG21691
EndoC_BH1161221
EndoC-BH11
GM128781
MIN61
in vitro differentiated cells
embryonic stem cell261
adipocyte14
chondrocyte5
immature adipocyte11
Posterior foregut1
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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