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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
57
ATAC-seq
34
ChIP-seq
2
single cell RNA-seq
Assay category
62
Transcription
57
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
110
bam
85
bigWig
82
bed narrowPeak
58
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
153
Homo sapiens
Biosample type
85
tissue
66
cell line
2
primary cell
Organ
872
pancreas
775
liver
652
connective tissue
483
adipose tissue
464
epithelium
355
heart
272
kidney
249
brain
221
vasculature
218
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
58
musculature of body
56
eye
41
nerve
34
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
132
GRCh38
101
hg19
Lab
153
AMP-T2D consortium
files.file_type!
bed bed3+
bed bedMethyl
month_released!
April, 2018
BIOSAMPLE
ASSAY
153 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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