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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
25
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
19
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
93
bam
85
bigWig
74
bed narrowPeak
58
tsv
25
bigBed narrowPeak
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
128
Homo sapiens
Biosample type
64
cell line
62
tissue
2
primary cell
Organ
821
pancreas
668
liver
618
connective tissue
459
adipose tissue
434
epithelium
335
heart
260
kidney
218
brain
199
vasculature
197
blood vessel
159
bone element
128
artery
68
limb
63
blood
63
bodily fluid
55
eye
52
musculature of body
30
nerve
28
embryo
20
lung
18
vein
16
skeleton
14
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
128
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
128
AMP-T2D consortium
files.file_type!
bed bed3+
bed bedMethyl
month_released!
April, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
36
3
tibial artery
1
1
18
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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